Epigenetics and Trauma: How Epigenetics can potentially revolutionize our understanding of the structure and behavior of biological life on Earth
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Epigenetics and Trauma - Ronald Golden
Table of Contents
Intrοduсtiοn
Chapter One
Chapter Two
Chapter Three
Chapter Four
Chapter Five
Chapter Six
Chapter Seven
Epigenetics and Trauma
How Epigenetics can potentially revolutionize our understanding of the structure and behavior of biological life on Earth
Ronald Golden
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Introductions
In its modern sense, epigenetics is the term used to describe inheritance by mechanisms other than the DNA sequence of genes. It can be applied to the characteristics passed from a cell to its daughter cells in a cell division and to the characteristics of the whole organism. This functions through chemical tags attached to chromosomes that essentially turn genes on or off.
Scientists researching the microscopic roundworm Caenorhabditis elegans recently uncovered a series of mutations that increased the normal 2-3 week lifetime of the worms by up to 30%. It was fascinating, not least because findings of species such as roundworms will also help us appreciate mechanisms such as aging of humans. That was not the end of the tale, though, because the researchers discovered that the offspring of long-lived roundworms could still survive longer than average, even though they had just received the unmodified form of the genes from their ancestors. It doesn't appear to make sense at first; obviously characteristics such as hair colour, height, and even how long we or a tiny worm might possibly survive are borne in the DNA set of genes that we inherit from our ancestors. And how do we overcome the conundrum on how roundworms acquired a long-lived trait, without inheriting the DNA code that initially triggered it? The solution to this is epigenetics.
Not all in your DNA In a nutshell, epigenetics is a study of characteristics or phenotypes
that do not involve changes in the DNA sequence; and long-lived roundworms are just one of many examples. Some, as we can see below, include how the queen and worker honey bees may look so different despite being genetically similar, how malnutrition in human societies may influence the wellbeing and survival of the next generation, why all tortoiseshell cats are female, and how we all grow from a single cell (a fertilized egg) to end up with bodies comprising several different forms of specialized bees.
One way to look at epigenetics is like this; while conventional biology explains how DNA mutations in our genomes are transferred from one generation to the next, epigenetics defines how genomes are transferred on. Think about epigenetics as metadata, knowledge identifying and arranging the underlying details to allow a code comparison. Of example, if you buy an MP3 player, it would hold a ton of details, such as MP3 files.
Think of them as analogous to genes. But you're definitely going to have playlists, too, or you can play songs by artist or genre.
This content, playlist, artist, genre and so on is metadata. This decides which songs are performed and in what sequence, and that is what epigenetics is with genetics. This is a series of mechanisms that have the purpose of flipping on or expressing
genes, as molecular biologists would claim.
And epigenetics is about how genes are processed and used, rather than the DNA structure of genes themselves, so how does this work? In the past few decades, several scholars have been researching epigenetics and it is actually an field of intensive scientific intensity. We realize that part of the way epigenetics operates is by applying and extracting tiny chemical tags to DNA. You may think of such logos as post-it notes that show different genes with details on whether or not they can be turned on or off. In addition, the chemical marker in question is called the methyl group and is used to alter one of the four bases or
atomic symbols,
A, C, T and G, which make up the genetic code of our DNA. The letter that is labelled is C or cytosine, and when modified or methylated, it is labeled 5-methylcytosine.
Methyl groups are introduced to DNA by enzymes called DNA methyltransferase (DNMTs).
Epigenetic effects can sometimes happen to grandchildren More surprisingly, some data seem to suggest that grandchildren of women who were pregnant during Hunger Winter experience some of these effects. This clearly indicates an epigenetic process from what we have already mentioned. Work with Dutch Hunger Winter families begins, and a new analysis looking at the IGF2 gene has shown lower rates of methyl marker in the DNA of this gene in individuals subject to pre-birth malnutrition. While IGF2 might not itself be correlated with an increased risk of bad health in such people, it
demonstrates that epigenetic effects (i.e. reduction in the amount of methyl tags on different genes) generated prior to birth may continue for several decades. Research in livestock have also shown that a mother's diet may have an impact on her offspring. For example, feeding sheep with a diet without the types of food needed to produce methyl groups contributes to offspring with altered DNA methylation patterns and with higher than normal rates of certain health problems.
Epigenetics and imprinting, why Mum and Dad genes are not always equivalent We all have 23 pairs of chromosomes in our cells. For each pair, one came from a mother and one came from a father. Therefore, we inherit one copy of each gene from each parent, and usually believe that the role of the gene does not depend from which parent it originated. Nonetheless, conditions are special with imprinted genes. For such genes, only the maternal or paternal copy of the gene is involved, while the other version stays silent. There are at least 80 imprinted genes in humans and mice, many of which are involved in embryo or placenta development. How will one copy of a gene be turned off when the other copy is turned on in the same cell? The solution to this is epigenetics. Possibly the most researched imprinted gene is the IGF2 gene (see above). A portion of IGF2 acts as a turn. Unless the DNA is methylated, the IGF2 protein may be expressed here. The transition is only methylated in Dad's variant of the gene, and only this variant is released, while the
maternal copy is quiet. The transition is believed to be set up in gametes (eggs and sperm) such that, right at the outset, the genes obtained at Mum and Dad's genes are branded individually with epigenetic tags and are thus not equal.
Imprinting and psychiatric illnesses Angelmann and Prader-Willi syndromes are two separate neurological diseases with specific signs, all attributed to the lack of part of chromosome 15. Children who inherit a copy of this abnormal chromosome experience either Angelmann or Prader-Willi syndrome, despite possessing a regular copy of the chromosome from their other parent. But how can the same mutation (loss of chromosome 15) contribute to such two separate conditions? The solution resides in the finding that this unique fragment of chromosome 15
includes a variety of genes that are imprinted such that neither the paternal or maternal variant of these genes is expressed; one of the two